MBG wiki | RecentChanges | Blog | 2021-09-24 | 2021-09-23

φ,ψ time series

xplor it is :

structure @native.psf end

dynamics analysis
    pick dihedral 
   ( residue 19 and name c  and segid="A   ")
   ( residue 20 and name n  and segid="A   ") 
   ( residue 20 and name ca and segid="A   ") 
   ( residue 20 and name c  and segid="A   ")  geometry

  asci=false
  input=fitted.dcd
  begin=0 skip=1 stop=2000000

  output=phi_20A.list

end

stop

structure @native.psf end

dynamics analysis
    pick dihedral 
   ( residue 36 and name n   and segid="A   ")
   ( residue 36 and name ca  and segid="A   ") 
   ( residue 36 and name c   and segid="A   ")
   ( residue 37 and name n   and segid="A   ")  geometry

  asci=false
  input=fitted.dcd
  begin=0 skip=1 stop=2000000

  output=psi_36A.list

end

stop