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- Molecular dynamics tutorials (NAMD-based) :
- Running a molecular dynamics simulation of native Rop
- Running a molecular dynamics simulation of the Dickerson (DNA) dodecamer
- Performing a molecular dynamics simulation in a hexagonal cell
- Performing a molecular dynamics simulation in a truncated octahedral cell
- Running a molecular dynamics simulation of protein G in a hexagonal cell
- Running a molecular dynamics simulation of a tetrapeptide in a truncated octahedral cell
- Accuracy and stability issues
- Molecular dynamics with Gromacs :