SGE script to start a simple (serial) job on the cluster

To submit a simple serial (ie non-parallel) job on the cluster via SGE do the following :

• Create a dedicated directory somewhere in /work
• Place all files needed by your job (and possibly also the executable) in this directory
• Create a file with a suitable name (like 'myjob.sh') containing the following:

#!/bin/csh -f
#

#
# The name of the job (Test) ...
#
#$ -N Test

#
# Execute from the current working directory ...
#
#$ -cwd

#
# Standard error and output should go into the current working directory ...
#
#$ -e ./
#$ -o ./

mosrun -L my_program

• Edit this file and change my_program with the name of your executable (but keep the 'mosrun -L' stuff).
• Submit your job with qsub myjob.sh