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2024-05-03
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2024-05-02
Editing revision 6 of Molecular dynamics tutorials
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* Molecular dynamics tutorials (NAMD-based) : ** [[Running a molecular dynamics simulation of native Rop]] ** [[Running a molecular dynamics simulation of the Dickerson (DNA) dodecamer]] ** [[Performing a molecular dynamics simulation in a hexagonal cell]] ** [[Performing a molecular dynamics simulation in a truncated octahedral cell]] ** [[Running a molecular dynamics simulation of protein G in a hexagonal cell]] ** [[Running a molecular dynamics simulation of a tetrapeptide in a truncated octahedral cell]] ** [[Accuracy and stability issues]] * [[Cationic peptide simulation (ph 2)]] * [[Backup, backup, backup ...]] ** [[Backup, backup, backup ... using the server's DVD]] * Molecular dynamics with Gromacs : ** [[Running one of the Gromacs' benchmarks]] ** http://www.mpibpc.gwdg.de/groups/de_groot/compbio/ * [[Electrostatics calculations with APBS and PyMol]]
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