MBG wiki: Search for: glykos

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2009-03-30
Hello. It's me again! Simera bariemai opote den tha grapsw kati. Mono oti evala sto 3o etos sto xeimerino . . . 12 exei pagwsei i othoni stis akres. Mr Glykos prepei na valoume kana screensaver... . . .
1K - last updated 2009-03-30 11:31 UTC by server.cluster.mbg.gr

Accuracy and stability issues
There are some accuracy and stability issues concerning the molecular dynamics methods described in the . . . to follow Marc's advice. == Message 1== From glykos@mbg.duth.gr Tue Apr 5 13:34:00 2005 Date: Tue, . . . Apr 2005 13:33:48 +0300 (EEST) From: Nicholas M Glykos <glykos@mbg.duth.gr> To: namd-l@ks.uiuc.edu . . . Q. Ma <qma@oak.njit.edu> To: Nicholas M Glykos <glykos@mbg.duth.gr> Cc: namd-l@ks.uiuc.edu . . . this helps. Good luck! Marc ==Message 3== From glykos@mbg.duth.gr Tue Apr 5 18:02:34 2005 Date: Tue, . . .
7K - last updated 2005-06-30 12:35 UTC by glykos

NMG
glykos@mbg.duth.gr [από οπουδήποτε] glykos@aspera.cluster.mbg.gr [από τους υπολογιστές . . .
1K - last updated 2004-10-27 15:48 UTC by NMG

Parallelisation of a molecular replacement program
The aim of this project is to usefully parallelise (using MPI[http://www-unix.mcs.anl.gov/mpi/]) the . . . replacement program Qs[http://www.mbg.duth.gr/~glykos/Qs.html]. Initial tests with a simple-minded . . .
1K - last updated 2005-03-08 10:30 UTC by NMG

Running a molecular dynamics simulation of native Rop
What follows is a mostly complete description of the /practical/ steps required for performing a short . . . 1 NAMD 2.5 Linux-i686 1 pc09.cluster.mbg.gr glykos Info: Running on 1 processors. Info: 1335 kB . . . You should see something like -rw-rw-r-- 1 glykos glykos 2029503 Oct 30 15:19 equil_ca.coor -rw-rw-r-- . . . 1 glykos glykos 2029502 Oct 30 15:19 equil_ca.vel -rw-rw-r-- . . . 1 glykos glykos 222 Oct 30 15:19 equil_ca.xsc -rw-rw-r-- . . .
27K - last updated 2005-09-27 12:03 UTC by server.cluster.mbg.gr

Running a molecular dynamics simulation of protein G in a hexagonal cell
What follows is a mostly complete description of the /practical/ steps required for performing a short . . . 1 NAMD 2.5 Linux-i686 2 aspera.cluster.mbg.gr glykos Info: Running on 2 processors. Info: 1469 kB . . . You should see something like -rw-rw-r-- 1 glykos glykos 2029503 Oct 30 15:19 equil_ca.coor -rw-rw-r-- . . . 1 glykos glykos 2029502 Oct 30 15:19 equil_ca.vel -rw-rw-r-- . . . 1 glykos glykos 222 Oct 30 15:19 equil_ca.xsc -rw-rw-r-- . . .
25K - last updated 2005-09-27 12:05 UTC by server.cluster.mbg.gr

Running a molecular dynamics simulation of the Dickerson (DNA) dodecamer
What follows is a mostly complete description of the /practical/ steps required for performing a short . . . 1 NAMD 2.5 Linux-i686 1 aspera.cluster.mbg.gr glykos Info: Running on 1 processors. Info: 1335 kB . . . You should see something like -rw-rw-r-- 1 glykos glykos 2029503 Oct 30 15:19 equil_P.coor -rw-rw-r-- . . . 1 glykos glykos 2029502 Oct 30 15:19 equil_P.vel -rw-rw-r-- . . . 1 glykos glykos 222 Oct 30 15:19 equil_P.xsc -rw-rw-r-- . . .
30K - last updated 2005-09-27 12:04 UTC by server.cluster.mbg.gr

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